[Bioperl-l] indexing with several processors
Rutger Vos
rvosa at sfu.ca
Thu Nov 16 07:19:43 UTC 2006
I notice nobody has responded yet. Without looking at the code I'm
guessing here, but I would be very surprised if any part of bioperl is
smart enough to be able to switch to some kind of mpi architecture, or
any other clever way of parallelizing tasks on multi-processor
architectures. If you can split the job up by hand and start scripts on
the chunks, that might work.
Good luck,
Rutger
guillermo wrote:
> Hello,
>
> While using the Bio::Index::GenBank module for indexing Genbank, is
> there any option to run the process with more than one processor.
>
> Thanks
>
>
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Rutger A. Vos
Postdoctoral research fellow
University of British Columbia
Personal site: http://www.sfu.ca/~rvosa
CIPRES: http://www.phylo.org
Bio::Phylo: http://search.cpan.org/~rvosa/Bio-Phylo/
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