[Bioperl-l] EntrezGene test failures

[Stefan Kirov]

I thought Sendu rolled back some changes I've made. I was planning to
commit changes both to the module and the tests, but I am not done yet.
Stefan

----- Original Message -----
From: Chris Fields <cjfields at uiuc.edu>
Date: Sunday, November 26, 2006 5:04 pm
Subject: [Bioperl-l] EntrezGene test failures

> I'm getting failed tests from entrezgene.t off CVS HEAD.  Using './ 
> Build test --test_files t/entrezgene.t --verbose':
> 
> ..
> ok 1367
> ok 1368 - correct number of loops for T18
> # Looks like you planned 1417 tests but only ran 1368.
> # Looks like you failed 22 tests of 1368 run.
> dubious
>         Test returned status 22 (wstat 5632, 0x1600)
> DIED. FAILED tests 56, 162, 182, 184, 367, 512, 603, 631, 667, 711, 
> 
> 766, 920, 998, 1107, 1140, 1192, 1225, 1248, 1270, 1297, 1320, 
> 1345,  
> 1369-1417
>         Failed 71/1417 tests, 94.99% okay
> Failed Test    Stat Wstat Total Fail  List of Failed
> --------------------------------------------------------------------
> ---- 
> -------
> t/entrezgene.t   22  5632  1417  120  56 162 182 184 367 512 603 
> 631  
> 667 711
>                                       766 920 998 1107 1140 1192  
> 1225 1248 1270
>                                       1297 1320 1345 1369-1417
> Failed 1/1 test scripts. 71/1417 subtests failed.
> Files=1, Tests=1417,  3 wallclock secs ( 3.06 cusr +  0.09 csys =   
> 3.15 CPU)
> Failed 1/1 test programs. 71/1417 subtests failed.
> 
> 
> 
> Looks like not all tests are run.  Of the tests that fail, all are  
> from unmatched values.  A few examples:
> 
> 
> #   Failed test 'correct number of loops for T15'
> #   in t/entrezgene.t at line 495.
> #          got: '14'
> #     expected: '16'
> not ok 56 - correct number of loops for T15
> 
> ...
> 
> #   Failed test 'correct number of loops for T15'
> #   in t/entrezgene.t at line 495.
> #          got: '28'
> #     expected: '30'
> 
> ...
> 
> not ok 162 - correct number of loops for T15
> 
> #   Failed test in t/entrezgene.t at line 456.
> #          got: '0'
> #     expected: '1'
> 
> #   Failed test 'correct number of loops for T15'
> #   in t/entrezgene.t at line 495.
> #          got: '6'
> #     expected: '5'
> 
> 
> 
> chris
> 
> Christopher Fields
> Postdoctoral Researcher
> Lab of Dr. Robert Switzer
> Dept of Biochemistry
> University of Illinois Urbana-Champaign
> 
> 
> 
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