[Bioperl-l] parsing xml output

[Warren Gish]

Just to clarify, the XML output from WU-BLAST conforms to the standard
NCBI_BlastOutput.dtd.  Technically, contents of data fields could still be
incompatible, but care was taken to ensure compatibility.  If someone
identifies a difference that prevents parsing or proper interpretation of
the WU-BLAST output, please let me know.
Regards,
--Warren 

> -----Original Message-----
> From: bioperl-l-bounces at lists.open-bio.org 
> [mailto:bioperl-l-bounces at lists.open-bio.org] On Behalf Of 
> Jason Stajich
> Sent: Thursday, May 18, 2006 5:23 PM
> To: Hubert Prielinger
> Cc: bioperl-l at bioperl.org
> Subject: Re: [Bioperl-l] parsing xml output
> 
> we don't parse WU-BLAST XML at this time.  We'd welcome someone  
> contributing this.
> 
> ncbi XML is parsed with blastxml format.
> 
> -jason
> On May 18, 2006, at 4:41 PM, Hubert Prielinger wrote:
> 
> > hi,
> > what is the best way to parse NCBI- and WU- Blast XML output....
> > and is it possible to parse both with the same parser, or 
> differ their
> > XML output...
> >
> > thanks
> > _______________________________________________
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> > Bioperl-l at lists.open-bio.org
> > http://lists.open-bio.org/mailman/listinfo/bioperl-l
> 
> --
> Jason Stajich
> Duke University
> http://www.duke.edu/~jes12
> 
> 
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