[Bioperl-l] Random access to subsequences using OBDA or bio::db::flat
Sean Davis
sdavis2 at mail.nih.gov
Wed Mar 22 13:28:29 UTC 2006
I have a pretty straightforward question. Is it possible to use
bio::db::flat indexed file access to get subsequences quickly (like
chr1:100000-100100) like bio::index::fasta, or do I need to use
bio::index::fasta for that kind of access? I didn't see any specific
mention of it in the docs, so I doubt it is possible, but just wanted to
make sure.
Thanks,
Sean
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