[Bioperl-l] genbank2gff3.pl on new human RefSeq

Ed Green green at eva.mpg.de
Mon Mar 13 21:22:26 UTC 2006

Previous message: [Bioperl-l] translating a GenBank file
Next message: [Bioperl-l] EMBL/genbank organism parsing
Messages sorted by: [ date ] [ thread ] [ subject ] [ author ]

I am trying to get gff3 format annotation of the new RefSeq human genome build/annotation (v36.1). 
There are a few genbank contigs that seem to make Bio::SeqFeature::Tools::Unflattener get confused. 
For example, NT_029998.7 is a problem.

I don't know if this warrants a bugzilla report, but it'd be nice to have this work.

Ed Green

Previous message: [Bioperl-l] translating a GenBank file
Next message: [Bioperl-l] EMBL/genbank organism parsing
Messages sorted by: [ date ] [ thread ] [ subject ] [ author ]

More information about the Bioperl-l mailing list