[Bioperl-l] possible bug printing GenBank feature qualfiers
torsten.seemann at infotech.monash.edu.au
Sat Apr 1 00:15:25 UTC 2006
Hilmar Lapp wrote:
> The only problem with Heikki's version of the line is that if the
> value is undefined you get a (ugly) warning from perl stating that you
> printed an undefined value. Since normally tags should always have a
> value (even if an empty string) this is a rather theoretical issue.
I thought it would be worth mentioning here that tags like /pseudo,
which don't have a value, quoted or otherwise, can be set using the magic
string value "_no_value", when using the older tag system, eg.
Perhaps the 'undef' value could be used to replace '_no_value' cf. NULL in SQL...
I'm not sure how this works with the new Bio::Annotation* approach, which uses
typed objects rather than strings. And i'm also not sure if the "_no_value"
business works with the GFF and other modules.
Victorian Bioinformatics Consortium, Monash University, Australia
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