[Bioperl-l] Installing staden io_lib on windows?

[Scott Cain]

Hi all,

I'm wondering if anyone has tried to install Staden's io_lib on Windows,
and if so, how did it go?  I am not much of a Windows person, but I've
tried to make it under cygwin only to get this message:

make all-recursive 
make[1]: Entering directory `/home/scott/io_lib-1.9.2' 
Making all in read 
make[2]: Entering directory `/home/scott/io_lib-1.9.2/read' 
if gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -I../include -I../read -I../alf
-I../abi -I../ctf -I../ztr -I../plain -I../scf -I../sff -I../exp_file
-I../utils -I/usr/local/include -g -O2 -MT Read.o -MD -MP -MF
".deps/Read.Tpo" -c -o Read.o Read.c; \ 
then mv -f ".deps/Read.Tpo" ".deps/Read.Po"; else rm -f
".deps/Read.Tpo"; exit 1; fi 
In file included from Read.h:43, 
from Read.c:40: 
../utils/os.h:346:2: #error Must define SP_BIG_ENDIAN or
SP_LITTLE_ENDIAN in Makefile 
make[2]: *** [Read.o] Error 1 
make[2]: Leaving directory `/home/scott/io_lib-1.9.2/read' 
make[1]: *** [all-recursive] Error 1 
make[1]: Leaving directory `/home/scott/io_lib-1.9.2' 
make: *** [all] Error 2 

I'm guessing there is a flag I can pass to the configure script to get
the endian-ness right, but I don't know (and I don't know if this is
just the beginning of a long, fruitless road :-)

I would like to use Bio::SCF (from CPAN) in conjuction with the trace
glyph in BioGraphics to view traces in GBrowse.

Thanks for any advice,
Scott

-- 
------------------------------------------------------------------------
Scott Cain, Ph. D.                                   cain.cshl at gmail.com
GMOD Coordinator (http://www.gmod.org/)                     216-392-3087
Cold Spring Harbor Laboratory

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