[Bioperl-l] New EMBL format parsing/writing

simon andrews (BI) simon.andrews at bbsrc.ac.uk
Mon Jul 24 13:34:10 UTC 2006


I few weeks ago I saw a couple of messages on this list mentioning the
new ID/SV line format used in the latest EMBL release.  I'm in the
process of moving our database server over to the new format and was
looking to update SeqIO::embl.pm.

I'm sure someone said they'd made a patch to fix up parsing of the new
format, but I can't find it either in CVS or bugzilla.

Rather than do this again myself can someone point me to an updated
SeqIO::embl.pm please?  If there isn't one then I'll look into making
the patch myself.

Since this is such a major change are there any plans to put out a new
release with this fix included?  I'm sure this will start to bite more
people as the new format becomes more widely adopted.


Cheers

Simon.

-- 
Simon Andrews PhD
Bioinformatics Group
The Babraham Institute

simon.andrews at bbsrc.ac.uk
+44 (0) 1223 496463 




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