[Bioperl-l] Blast Output Parsing

Prabu R prabubio at gmail.com
Thu Jul 20 16:01:35 UTC 2006

Dear All!

I am now trying to parse a Blast output using PERL.

I have to extract each alignment and have to parse the alignment. I mean, I
have to check whether a particular part of the given sequence got aligned

Anybody please tell me what module in PERL I have to use for getting this.

I've tried Bio::SearchIO.  But I didnt get any method to get the alignment.

Kindly help.

R. Prabu

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