[Bioperl-l] Accessing TRANSFAC matrices

Stefan Kirov skirov at utk.edu
Wed Jul 19 21:54:03 UTC 2006

I have nothing to do with TFBS (except for using it). I suggest you 
contact Boris Lenhard who is behind TFBS.
Please also send bioperl questions to the list.
Finally, I believe TRANSFAC does not distribute the data files anymore. 
However, if you find out this is not the case, please let me know.

ong at embl.de wrote:

>HI ,
>   Good day, i am trying to retrieve TRANSFAC matrices via TFBS Perl module, but
>it happens that about 50 matrices are missing after M00359 do you have any idea?
>Also i wish to try using the Bio::Matrix::PSM::IO object, but can you advise how
>do i get the matrix.dat which is a transfac file?
>   Tahnks and hear for you soon.

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