[Bioperl-l] BLAST running options
Vesselin Baev
vebaev at gmail.com
Sat Jul 8 20:59:40 UTC 2006
Hi,
I'm parsing Blast results, but I need an Blast option to limit limit and
decrease the Blast number of results.
I'm blasting an oligo about 40nt and I need only results which are with
mismatches (not more than 10) or exactly matching but in the length as
the query - 40.
I do not want all the big amount of results that blast gave me about
shorter matching.
Do anyone knows what king of BLAST option to use?
Thanks
--
------------------------------------------------
University of Plovdiv
Faculty of Biology
Dept. Molecular Biology and Plant Physiology
Tzar Asen 24
Plovdiv 4000, BULGARIA
vebaev at gmail.com
tel.00359889034044
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