[Bioperl-l] BLOSUM matrix

[Torsten Seemann]

Sudha,

> Being a beginner perl programming, was wondering if anyone can help me with implementation of BLOSUM 65 matrix for the following alignments or in 
general. Any inputs, websites to help with this are appreciated.
>   AILCAA
>   ALLLAA
>   ILIICL

The BLOSUM65 matrix does not define a method for alignment, it just 
provides some parameters. Perhaps you should read this first:

http://en.wikipedia.org/wiki/Sequence_alignment

-- 
Dr Torsten Seemann               http://www.vicbioinformatics.com
Victorian Bioinformatics Consortium, Monash University, Australia