[Bioperl-l] Blast Output Parsing
Prabu R
prabubio at gmail.com
Thu Jul 20 12:01:35 EDT 2006
Dear All!
I am now trying to parse a Blast output using PERL.
I have to extract each alignment and have to parse the alignment. I mean, I
have to check whether a particular part of the given sequence got aligned
100%.
Anybody please tell me what module in PERL I have to use for getting this.
I've tried Bio::SearchIO. But I didnt get any method to get the alignment.
Kindly help.
Thanks,
R. Prabu
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