[Bioperl-l] RNAMotif parser

[Jason Stajich]

exactly!
On Jan 28, 2006, at 5:04 AM, Torsten Seemann wrote:

>>> From my understanding, a module to _parse the output_ of some  
>>> TOOL goes
>>> in Bio::Tools::TOOL. The wrapper to _run_ TOOL goes in
>>> Bio::Tools::Run::TOOL. Usually the run() method in  
>>> Bio::Tools::Run::TOOL
>>> takes the TOOL output and creates a Bio::Tools::TOOL object with the
>>> result in it as a convenience.
>
>> Yeah, forgot about that.  I just remember a discussion at one  
>> point a while
>> back about splitting off sections of bioperl core b/c some thought
>> bioperl-core was getting too big; I didn't want to get too deep  
>> into writing
>> code w/o asking.  Okay, then, that's settled.
>
> I think this is still true. Anything in Bio::Tools::Run namespace  
> should
> be in bioperl-run CVS (except for RemoteBlast and StandAloneBlast  
> which
> are in bioperl-live core due to popularity). All the output parsers  
> are
> in bioperl-live core.
>
>
> -- 
> Torsten Seemann
> Victorian Bioinformatics Consortium, Monash University, Australia
> http://www.vicbioinformatics.com/
> Phone: +61 3 9905 9010
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--
Jason Stajich
Duke University
http://www.duke.edu/~jes12