[Bioperl-l] standalone blast composition based statistics parameter

[Torsten Seemann]

Hubert,

> Does anybody know whether it is possible to perform a with the 
> standalone blast a database search where the composition based 
> statistics parameter is on
> and what's the abbreviation for the parameter

The StandAloneBlast only runs the "blastall" binary on your system. It 
accepts all the command line options (like "-d" etc.) that "blastall" 
does but just passes them as-is; it doesn't do anything special.

On a Unix system, type "blastall -" to list all the options that your 
BLAST binary supports.

-- 
Torsten Seemann
Victorian Bioinformatics Consortium, Monash University, Australia
http://www.vicbioinformatics.com/
Phone: +61 3 9905 9010