[Bioperl-l] RNAMotif module (Bio::Tools::RNAMotif)

[Chris Fields]

I'll probably goes with Heikki's advice and post the module (with  
POD, tests, and test file) to bugzilla as an enhancement.  That way  
it can be looked through before committing.  I will likely have a few  
more modules for ERPIN and maybe Infernal int he next few months (if  
I can get it up and running).

Also, completely off-topic, I'll post what I have written up for  
installing bioperl-db on WinXP here soon.  I think it should probably  
be included in the wiki in some way, maybe as a link from the bioperl- 
db wiki page.

Thanks Hilmar, Heikki!

Chris


On Feb 7, 2006, at 11:48 PM, Hilmar Lapp wrote:

> I presume you don't have a cvs write account yet - if you do just add
> and commit the module and test. Otherwise could you post the POD to
> the list please; either somebody with an account will hopefully
> volunteer or Jason or I or Heikki or Aaron will assume mentorship and
> commit the code with feedback to you. Unless you completely refuse to
> heed any and all advice ;) that person will then soon try to absolve
> him/herself of having to do this again for you and support you for
> receiving a cvs write account of your own.
>
>    -hilmar
>
> On 2/7/06, Chris Fields <cjfields at uiuc.edu> wrote:
>> I want to submit a module for parsing RNAMotif output
>> (Bio::Tools::RNAMotif).  It is capable, at the moment, of scanning
>> output and returning Bio::SeqFeature::Generic objects with added tags
>> for descriptors/sequences/file info.  I'm in the process of writing
>> up tests and going through biodesign to make sure everything's
>> kosher, but the module itself is essentially ready-to-go.  What
>> should I do next?
>>
>> Christopher Fields
>> Postdoctoral Researcher
>> Lab of Dr. Robert Switzer
>> Dept of Biochemistry
>> University of Illinois Urbana-Champaign
>>
>>
>>
>> _______________________________________________
>> Bioperl-l mailing list
>> Bioperl-l at lists.open-bio.org
>> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>>
>>
>
>
> --
> ----------------------------------------------------------
> : Hilmar Lapp -:- San Diego, CA -:- hlapp at gmx dot net :
> ----------------------------------------------------------
>
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l

Christopher Fields
Postdoctoral Researcher
Lab of Dr. Robert Switzer
Dept of Biochemistry
University of Illinois Urbana-Champaign