[Bioperl-l] Gibbs sampling algorithm?

[Chris Fields]

Do you mean this Gibbs program?

ftp://ncbi.nlm.nih.gov/pub/neuwald/ 

You can also request a license from the Gibbs Motif Sampler homepage, which
is more up to date:

http://bayesweb.wadsworth.org/gibbs/gibbs.html.

Christopher Fields
Postdoctoral Researcher - Switzer Lab
Dept. of Biochemistry
University of Illinois Urbana-Champaign 

> -----Original Message-----
> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-
> bounces at lists.open-bio.org] On Behalf Of Sam Al-Droubi
> Sent: Friday, February 03, 2006 12:38 PM
> To: bioperl-l at lists.open-bio.org
> Subject: [Bioperl-l] Gibbs sampling algorithm?
> 
> Hi everyone,
> 
> I am wondering if anyone has implemented the Gibbs sampling algorithm in
> BioPerl or otherwise for finding motifs.  I saw
> Bio::Tools::Run::PiseApplication::gibbs which I believe calls a Gibbs
> program which is not free open source, I think.   I prefer not to write my
> one Gibbs sampling algorithm if it is already out there.  Any comments are
> appreciated.
> 
> Thank you
> 
> Sincerely,
> Sam Al-Droubi, M.S.
> saldroubi at yahoo.com
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