[Bioperl-l] [SO-devel] GFF3 Validator

Suzanna Lewis suzi at fruitfly.org
Fri Apr 14 03:32:27 UTC 2006


That is nice. Thanks for the pointer.

-S

On Apr 9, 2006, at 1:37 PM, Lincoln Stein wrote:

> Hi All,
>
> I just wanted to draw your attention to a GFF3 validator put up by the  
> NIAID
> BRC program. It checks that the GFF3 file is well formed and that only  
> SO
> terms are used in the feature type column. It doesn't check that  
> parent/child
> relationships follow the spec, but it is a real good start.
>
> The documentation: http://iowg.brcdevel.org/gff3.html
> Standalone script: http://iowg.brcdevel.org/gff3validator/
> Web-based script:
> 	http://www.tigr.org/tigr-scripts/prok_manatee/brc-central/ 
> gff_validation.cgi
>
> Lincoln
>
> -- 
> Lincoln D. Stein
> Cold Spring Harbor Laboratory
> 1 Bungtown Road
> Cold Spring Harbor, NY 11724
> (516) 367-8380 (voice)
> (516) 367-8389 (fax)
> FOR URGENT MESSAGES & SCHEDULING,
> PLEASE CONTACT MY ASSISTANT,
> SANDRA MICHELSEN, AT michelse at cshl.edu
>
>
> -------------------------------------------------------
> This SF.Net email is sponsored by xPML, a groundbreaking scripting  
> language
> that extends applications into web and mobile media. Attend the live  
> webcast
> and join the prime developer group breaking into this new coding  
> territory!
> http://sel.as-us.falkag.net/sel? 
> cmd=lnk&kid=110944&bid=241720&dat=121642
> _______________________________________________
> SOng-devel mailing list
> SOng-devel at lists.sourceforge.net
> https://lists.sourceforge.net/lists/listinfo/song-devel




More information about the Bioperl-l mailing list