[Bioperl-l] primer pair sequence search

[Kevin Victor]

Hi, I am interested to know if there is any optimal way to search for primer
pair sequences in a given set of longer sequences. I would like to do this
in batch mode. This would be more like searching for substrings in a string
where the substrings we are searching are several thousands and are known.
Any suggestions would be very helpful.

Thanks,
Kevin