[Bioperl-l] GFF3 Validator
Lincoln Stein
lstein at cshl.edu
Sun Apr 9 16:37:36 EDT 2006
Hi All,
I just wanted to draw your attention to a GFF3 validator put up by the NIAID
BRC program. It checks that the GFF3 file is well formed and that only SO
terms are used in the feature type column. It doesn't check that parent/child
relationships follow the spec, but it is a real good start.
The documentation: http://iowg.brcdevel.org/gff3.html
Standalone script: http://iowg.brcdevel.org/gff3validator/
Web-based script:
http://www.tigr.org/tigr-scripts/prok_manatee/brc-central/gff_validation.cgi
Lincoln
--
Lincoln D. Stein
Cold Spring Harbor Laboratory
1 Bungtown Road
Cold Spring Harbor, NY 11724
(516) 367-8380 (voice)
(516) 367-8389 (fax)
FOR URGENT MESSAGES & SCHEDULING,
PLEASE CONTACT MY ASSISTANT,
SANDRA MICHELSEN, AT michelse at cshl.edu
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