[Bioperl-l] is there local alignment module in bioperl?

[Edward WIJAYA]

On Sat, 21 May 2005 05:16:59 +0800, wangqi <wangqi at seu.edu.cn> wrote:

> Dear all:
> I'm a beginner of bioperl, I want to know if bioperl has an alignment  
> module which can use swith-waterman algorithm to calculate the local  
> alignment between two sequences?
>

Is this what you are looking for?

http://search.cpan.org/~birney/bioperl-1.4/Bio/Tools/pSW.pm

-- 
Regards,
Edward WIJAYA
SINGAPORE