[Bioperl-l] need some help about pqs

jaiswal at iitk.ac.in jaiswal at iitk.ac.in
Mon Mar 7 02:00:51 EST 2005


Dear sir,

Im student of Bioinformatics
                    ,sir im sending u ,a problem which im facing at this
time , in PQS, it is attached with this mail,
 the problem is ..
1 . i have 6000 proteins which i selected for my research ( see attachment
as list_id ), in first case i run it on pqs page  of pdb id ,which give me
out put in     2. for mate  & then on going to   3ed step it will give me
result in  .mol file , which was i needed .

 It is all correct , but it is good for 100 or 200 proteins , it can be
done manually , but for more than 6000 proteins it is ,tedious  job , so ,
 can u help me to do this job by any other method other than manually , or
is their any script for downloading all these files.


              waiting for reply ..

                                      thanks..


----------------------------------------------------
        Ashish Kumar Jaiswal
        MScBioinformatics
        c/o Dr. Balaji Prakash
        Structural Biology Lab,
        Department of Biological Sciences
        and Bioengineering,
        Indian Institute of Technology, Kanpur,
        UP-208016, INDIA

        Ph:  +91-512-2594024
        FAX: +91-512-2594010
        Email: jaiswal at iitk.ac.in
----------------------------------------------------


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12AS

153L

16PK

16VP

1A04

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1ACF

1AD1

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1ADO

1ADW

1AE1

1AE7

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1AF5

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1AGI

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1AGX

1AH7

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1AIH

1AJ2

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1AKO

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1GS0

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1GT1

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1GU2

1GU6

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1GUL

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1GV3

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1H03

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1NN4

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1NNW

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1NO1

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1NP3

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1NPB

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1NQ6

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1NU0

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1NUL

1NUN

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1NUU

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1NV8

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1NVT

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1NW1

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1NWA

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1NX8

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1OGD

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1OHZ

1OI0

1OI1

1OI2

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1ORU

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1OS8

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1OU0

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1OUV

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1OW1

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1OZ2

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1OZB

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1P0F

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1P15

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1P1J

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1P22

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1P27

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1P2F

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1P32

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1P42

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1P57

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1P6O

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1P77

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1P80

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1P90

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1P99

1P9B

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1PA1

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1PB1

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1PC6

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1PDG

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1PDO

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1PE1

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1PEW

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1PF5

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1PFO

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1PG4

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1PGR

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1PHK

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1PI1

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1PJ3

1PJ5

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1PK5

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1PKH

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1PL4

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1PT6

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1PU5

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1Q12

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1Q20

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1Q32

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1QF8

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1RA0

1RA4

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1RC2

1RC6

1RC9

1RCD

1RCQ

1RCU

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1RD5

1RDO

1RDS

1RDT

1RDT

1RE5

1RE9

1REG

1REQ

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1REW

1REW

1RF3

1RF6

1RFE

1RFM

1RFN

1RFS

1RFY

1RFZ

1RG8

1RG9

1RGX

1RGZ

1RH1

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1RI5

1RI6

1RI7

1RIE

1RIF

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1RIL

1RIQ

1RJ1

1RJ8

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1RJW

1RK6

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1RL0

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1RLH

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1RLJ

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1RM4

1RM6

1RM6

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1RM8

1RMD

1RMW

1RNF

1RO2

1RO5

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1ROC

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1RP3

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1RTU

1RTV

1RTW

1RTY

1RU0

1RU4

1RU7

1RU7

1RU8

1RUR

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1RUT

1RV3

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1RVG

1RVK

1RVV

1RW0

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1RW6

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1RWY

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1RX0

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1RY2

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1S21

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1S95

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1SA0

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1SB8

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1SC3

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1SD4

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1SE0

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1SEB

1SEB

1SEB

1SED

1SEF

1SEI

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1SEN

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1SEZ

1SF8

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1SFD

1SFE

1SFF

1SFL

1SFN

1SFP

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1SFX

1SG1

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1SG6

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1SH0

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1SHU

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1SI5

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1SJ2

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1SK4

1SK7

1SKQ

1SKY

1SKY

1SKZ

1SL8

1SLQ

1SLU

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1SM2

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1SNY

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1SO2

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1SP3

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1SQ4

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1SR4

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1SR7

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1SRR

1SRV

1SS4

1SSQ

1SSX

1ST9

1STF

1STM

1STZ

1SU0

1SU1

1SU8

1SUM

1SUR

1SUU

1SUW

1SV6

1SV8

1SVA

1SVI

1SVM

1SVP

1SVS

1SVV

1SVY

1SW5

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1SX7

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1T01

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1T0T

1T10

1T11

1T15

1T16

1T1D

1T1G

1T1J

1T2A

1T2D

1T2L

1T2W

1T33

1T35

1T3B

1T3C

1T3D

1T3E

1T3I

1T3Q

1T3Q

1T3Q

1T3T

1T3U

1T3W

1T43

1T46

1T47

1T4B

1T4G

1T4H

1T4O

1T4W

1T56

1T57

1T5B

1T5H

1T5I

1T5J

1T5L

1T5O

1T5R

1T5Y

1T61

1T61

1T62

1T64

1T6A

1T6C

1T6E

1T6G

1T6G

1T6J

1T6L

1T6S

1T6T

1T6U

1T70

1T71

1T72

1T73

1T77

1T79

1T7F

1T7M

1T7R

1T7V

1T8P

1T8Q

1T8T

1T92

1T94

1T95

1T9B

1T9F

1T9H

1T9K

1TA0

1TA8

1TAZ

1TBF

1TBM

1TBR

1TBR

1TC1

1TC5

1TD4

1TD5

1TD6

1TDH

1TDJ

1TDQ

1TDQ

1TE2

1TE5

1TE6

1TED

1TEL

1TEV

1TEX

1TF0

1TF1

1TF4

1TF5

1TF7

1TFE

1TFF

1TFR

1TFU

1TFX

1TFZ

1TG8

1TGS

1TGZ

1TH0

1TH1

1TH1

1TH8

1TH8

1THF

1THM

1THQ

1THT

1THX

1TIA

1TIB

1TID

1TID

1TIE

1TII

1TIQ

1TIS

1TJ7

1TJC

1TJG

1TJG

1TJL

1TJN

1TJO

1TJV

1TJY

1TK4

1TK9

1TKE

1TKI

1TKS

1TL2

1TL9

1TLJ

1TLQ

1TLT

1TLU

1TLY

1TM0

1TM8

1TME

1TME

1TME

1TMK

1TML

1TMO

1TMY

1TN3

1TN6

1TN6

1TNR

1TNR

1TO0

1TO3

1TO6

1TO9

1TOA

1TOC

1TOC

1TOI

1TOL

1TON

1TP6

1TQ4

1TQ8

1TQG

1TQH

1TQI

1TQN

1TQX

1TQY

1TQY

1TR0

1TR9

1TRB

1TRE

1TRK

1TS9

1TSJ

1TT5

1TT5

1TT7

1TT8

1TU1

1TU3

1TU7

1TU9

1TUA

1TUE

1TUE

1TUH

1TUL

1TUV

1TUW

1TVD

1TVF

1TVG

1TVL

1TW3

1TW4

1TW6

1TW9

1TWD

1TWF

1TWF

1TWF

1TWF

1TWF

1TWF

1TWF

1TWF

1TWI

1TWL

1TWU

1TWY

1TX2

1TX4

1TX4

1TXD

1TXG

1TXJ

1TXK

1TXN

1TXO

1TXU

1TY0

1TY4

1TY9

1TYF

1TYG

1TYV

1TYY

1TZ0

1TZ9

1TZA

1TZF

1TZJ

1TZL

1TZP

1TZY

1TZY

1TZY

1TZY

1TZZ

1U00

1U02

1U04

1U08

1U0J

1U0K

1U0M

1U0S

1U0V

1U11

1U14

1U1I

1U1J

1U1Z

1U24

1U2C

1U2K

1U2M

1U2X

1U2Z

1U3D

1U3Y

1U4G

1U4J

1U4N

1U59

1U5H

1U5K

1U5P

1U5R

1U5U

1U60

1U61

1U69

1U6D

1U6G

1U6G

1U6G

1U6L

1U6M

1U79

1U7B

1U7G

1U7I

1U7K

1U7L

1U7N

1U7P

1U83

1U8S

1U8V

1U8W

1U8X

1U8Z

1U94

1U9A

1U9C

1U9D

1U9J

1U9K

1UA2

1UAC

1UAC

1UAC

1UAD

1UAI

1UAL

1UAN

1UAR

1UAS

1UAX

1UAY

1UAZ

1UB0

1UB2

1UB3

1UB4

1UB7

1UB9

1UBK

1UBK

1UBY

1UC2

1UC8

1UCT

1UCY

1UCY

1UCY

1UD0

1UD2

1UD9

1UDC

1UDD

1UDH

1UDS

1UDX

1UDZ

1UE5

1UE8

1UEA

1UEA

1UEB

1UED

1UEH

1UES

1UF2

1UF2

1UF2

1UF3

1UF5

1UF9

1UFA

1UFB

1UFK

1UFO

1UFR

1UFY

1UG6

1UGM

1UGN

1UGP

1UGP

1UGX

1UH5

1UHN

1UHV

1UI0

1UI5

1UIK

1UIR

1UIS

1UIU

1UIY

1UIZ

1UJ2

1UJ6

1UJK

1UJM

1UJN

1UJP

1UK8

1UKF

1UKG

1UKJ

1UKK

1UKL

1UKU

1UKV

1UKV

1UKW

1UKZ

1UL9

1ULH

1ULI

1ULI

1ULK

1ULQ

1ULS

1ULU

1ULV

1ULY

1ULZ

1UM0

1UM2

1UM5

1UM5

1UM8

1UMD

1UMD

1UMG

1UMH

1UMK

1UMM

1UMN

1UMR

1UMR

1UMV

1UMW

1UN0

1UN2

1UN3

1UN7

1UN8

1UNA

1UNF

1UNL

1UNL

1UNN

1UNN

1UNQ

1UOC

1UOH

1UOK

1UOL

1UOU

1UOW

1UOZ

1UP7

1UP8

1UP9

1UPB

1UPI

1UPK

1UPQ

1UPS

1UPT

1UPV

1UQR

1UQT

1UQW

1UQX

1UR3

1UR4

1UR5

1URH

1URJ

1URR

1URS

1URU

1URV

1URZ

1US0

1US3

1US5

1US7

1US7

1USC

1USG

1USJ

1USP

1USU

1USU

1USX

1USY

1USY

1UT1

1UT7

1UT9

1UTH

1UTN

1UTY

1UU1

1UU3

1UUF

1UUH

1UUL

1UUQ

1UUR

1UUY

1UUZ

1UUZ

1UV0

1UV7

1UW4

1UW6

1UW7

1UWH

1UWK

1UWS

1UWV

1UWZ

1UX5

1UX6

1UX8

1UXA

1UXO

1UXT

1UXY

1UXZ

1UY2

1UYJ

1UYL

1UYN

1UYP

1UYR

1UZ1

1UZ5

1UZB

1UZE

1UZP

1UZV

1UZX

1V00

1V02

1V04

1V0D

1V0E

1V0L

1V10

1V1A

1V1O

1V1Q

1V25

1V29

1V29

1V2A

1V2D

1V2X

1V2Z

1V30

1V33

1V37

1V3V

1V3W

1V3Y

1V43

1V47

1V4A

1V4P

1V4S

1V4V

1V4X

1V4X

1V54

1V54

1V54

1V54

1V54

1V58

1V5D

1V5V

1V5X

1V6C

1V6I

1V6S

1V6T

1V6Z

1V70

1V74

1V7C

1V7L

1V7R

1V7W

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1V84

1V8A

1V8B

1V8C

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1V8F

1V8G

1V8P

1V8Y

1V93

1V97

1V9C

1V9D

1V9L

1V9M

1V9T

1V9Y

1VA4

1VA6

1VAK

1VAP

1VAV

1VB5

1VBF

1VC1

1VC4

1VCA

1VCL

1VCP

1VD5

1VDC

1VDH

1VDK

1VDR

1VDU

1VDW

1VE6

1VE9

1VEA

1VEC

1VEI

1VES

1VET

1VET

1VF5

1VF5

1VF5

1VF5

1VF7

1VFJ

1VFR

1VFS

1VFV

1VG0

1VG0

1VG8

1VGG

1VGQ

1VGS

1VGW

1VGY

1VH0

1VH1

1VH4

1VH5

1VH6

1VH9

1VHC

1VHE

1VHH

1VHI

1VHK

1VHM

1VHN

1VHO

1VHQ

1VHR

1VHS

1VHU

1VHV

1VHW

1VHX

1VHY

1VHZ

1VI0

1VI1

1VI2

1VI4

1VI6

1VI7

1VI9

1VIA

1VIC

1VIM

1VIO

1VIP

1VIU

1VIZ

1VJ1

1VJ2

1VJ7

1VJE

1VJF

1VJG

1VJH

1VJL

1VJN

1VJO

1VJP

1VJR

1VJT

1VJU

1VJV

1VJX

1VJZ

1VK0

1VK1

1VK2

1VK3

1VK4

1VK6

1VKC

1VKD

1VKE

1VKF

1VKH

1VKI

1VKJ

1VKK

1VKM

1VKN

1VKO

1VKP

1VKU

1VKV

1VKW

1VKY

1VKZ

1VL0

1VL1

1VL2

1VL4

1VL5

1VL6

1VL7

1VL8

1VLA

1VLB

1VLC

1VLF

1VLF

1VLG

1VLH

1VLI

1VLJ

1VLM

1VLO

1VLP

1VLQ

1VLR

1VLS

1VLU

1VLV

1VLW

1VM6

1VM7

1VM9

1VMA

1VMB

1VMD

1VME

1VMF

1VMH

1VMI

1VMJ

1VMK

1VMO

1VNS

1VOK

1VOM

1VP2

1VP4

1VP5

1VP6

1VP7

1VP8

1VPA

1VPB

1VPD

1VPE

1VPH

1VPJ

1VPK

1VPL

1VPM

1VPN

1VPP

1VPQ

1VPX

1VPY

1VQ0

1VQ2

1VQQ

1VQR

1VQS

1VQV

1VQW

1VR2

1VRT

1VRT

1VSR

1VYB

1VYD

1VYF

1VYI

1VYR

1VYU

1VZ0

1VZ6

1VZE

1VZO

1VZV

1VZY

1W07

1W0D

1W0I

1W0M

1W0N

1W0P

1W15

1W1H

1W1W

1W1W

1W1Z

1W23

1W25

1W27

1W2F

1W2W

1W2W

1W2Y

1W30

1W32

1W3B

1W3I

1W3O

1W3U

1W44

1W4X

1W5B

1W5F

1W5T

1W6K

1W6N

1W6S

1W6U

1W74

1W7B

1W7L

1W7W

1W85

1W85

1W8A

1W8I

1W8M

1W8O

1W96

1W97

1W9A

1W9C

1W9P

1W9S

1WA5

1WA5

1WA5

1WAD

1WB1

1WBA

1WC3

1WC9

1WCH

1WD5

1WD6

1WD7

1WDA

1WDC

1WDD

1WDD

1WDE

1WDI

1WDJ

1WDK

1WDK

1WDN

1WDU

1WDV

1WDY

1WE1

1WEH

1WEK

1WER

1WF3

1WF4

1WF4

1WFX

1WG8

1WGB

1WHI

1WIW

1WJ9

1WJG

1WJX

1WK2

1WK4

1WKC

1WKQ

1WKR

1WLF

1WLG

1WLJ

1WM1

1WMD

1WMG

1WMS

1WMU

1WMU

1WMX

1WMZ

1WND

1WOH

1WOQ

1WOS

1WOU

1WP1

1WP5

1WP6

1WPB

1WPG

1WPH

1WPN

1WPO

1WPW

1WQ8

1WR8

1WS8

1WSA

1WTD

1WTL

1WTY

1WU2

1WU3

1WUB

1WUE

1WUF

1WUU

1WV2

1WVI

1WWB

1WWC

1WWW

1WWW

1X6M

1X6O

1X72

1X79

1X7D

1X7F

1X7G

1X7Y

1X7Y

1X82

1X87

1X8H

1X8M

1X8Q

1X8V

1X91

1X92

1X94

1X99

1X9F

1X9F

1X9F

1X9F

1X9G

1X9I

1X9Z

1XA0

1XA1

1XA3

1XA6

1XAA

1XAR

1XAU

1XB2

1XB2

1XB3

1XB7

1XBB

1XBN

1XBT

1XBW

1XC2

1XC3

1XCB

1XCC

1XCG

1XCG

1XCL

1XCO

1XD3

1XD5

1XD7

1XDI

1XDN

1XDT

1XDY

1XDZ

1XE0

1XE1

1XE3

1XE7

1XEA

1XEB

1XED

1XER

1XEW

1XEW

1XEY

1XFH

1XFI

1XFJ

1XFK

1XFO

1XFP

1XFP

1XFS

1XG0

1XG5

1XG7

1XG8

1XG9

1XGK

1XGS

1XHC

1XHD

1XHK

1XHL

1XHO

1XHX

1XI3

1XI6

1XI9

1XIA

1XIM

1XIO

1XIP

1XIQ

1XIW

1XIW

1XIW

1XIZ

1XJ5

1XJC

1XJD

1XJU

1XKI

1XKK

1XKL

1XKN

1XKQ

1XKR

1XKS

1XKT

1XL4

1XLY

1XM3

1XM5

1XM7

1XM8

1XMA

1XMB

1XMC

1XMP

1XMR

1XMT

1XMX

1XNB

1XNF

1XNI

1XNV

1XNZ

1XO5

1XO7

1XOR

1XOU

1XP4

1XP8

1XPC

1XPJ

1XPM

1XPP

1XQ1

1XQ4

1XQ5

1XQ5

1XQ6

1XQ9

1XQA

1XQB

1XQG

1XQM

1XQO

1XQU

1XR4

1XR5

1XR7

1XRG

1XRH

1XRI

1XRK

1XS1

1XS5

1XSJ

1XSM

1XSO

1XSQ

1XSV

1XSZ

1XT9

1XTC

1XTC

1XTE

1XTG

1XTO

1XTP

1XU1

1XU2

1XU9

1XUB

1XUU

1XUV

1XV1

1XV2

1XVA

1XVH

1XVI

1XVP

1XVP

1XVQ

1XVS

1XVX

1XW6

1XW8

1XWA

1XWL

1XWM

1XWS

1XWV

1XX4

1XX6

1XX7

1XXF

1XXF

1XXL

1XY7

1XYG

1XYN

1XYP

1XYZ

1XZP

1XZP

1Y01

1Y01

1Y02

1Y08

1Y0E

1Y0G

1Y0H

1Y0Z

1Y13

1Y14

1Y14

1Y1L

1Y1O

1Y1X

1Y23

1Y2I

1Y2T

1Y4T

1Y60

1Y63

1Y6H

1Y6J

1Y6L

1Y7E

1Y88

1Y8C

1Y9I

1Y9Q

1Y9U

1YAA

1YAC

1YAL

1YAT

1YAV

1YB1

1YB5

1YBE

1YBF

1YCC

1YCN

1YCQ

1YCR

1YCS

1YCS

1YDG

1YDH

1YDW

1YEM

1YEY

1YFM

1YFO

1YFQ

1YG2

1YGE

1YGH

1YGP

1YGS

1YNA

1YPR

1YRG

1YTT

1ZBD

1ZBD

1ZFJ

1ZIN

1ZNC

1ZPD

1ZRN

1ZYM

256B

2A0B

2A2U

2AAA

2AAK

2ABK

2ACT

2ADM

2AE2

2AHJ

2AHJ

2AK3

2APS

2ARC

2ASR

2AT2

2AY1

2AYH

2AYQ

2AZA

2BAA

2BB2

2BBK

2BBK

2BC2

2BCE

2BEM

2BES

2BTM

2BTV

2BTV

2CAS

2CAU

2CB5

2CBL

2CCY

2CEV

2CHR

2CKB

2CKB

2CKB

2CMD

2CND

2CUA

2CY3

2CYH

2DLD

2DPM

2DRI

2E2A

2E2C

2EBN

2EIF

2END

2ENG

2FCB

2FCR

2FHE

2FOK

2FRV

2FRV

2GDM

2GMF

2GPR

2GSA

2GSQ

2HBG

2HFT

2HGS

2HHM

2HLC

2HMZ

2HRV

2HVM

2ILA

2ILK

2LDX

2LHB

2LIS

2LJR

2LTN

2MAD

2MAD

2MCM

2MEV

2MEV

2MEV

2MHR

2MNR

2MYS

2MYS

2MYS

2NAC

2NAP

2NCD

2OAT

2PF2

2PGD

2PGK

2PIA

2PII

2PKA

2PLC

2POR

2PRD

2PSP

2PTD

2PTH

2PVA

2PVB

2RHE

2RIG

2RMC

2RSL

2RSP

2SAK

2SAS

2SCP

2SCU

2SCU

2SGA

2SLI

2SPC

2SQC

2STV

2TBV

2TCT

2TGI

2TMG

2TNF

2TOH

2TPS

2TPT

2TRC

2TRC

2TRX

2UCZ

2VHB

2VSG

2XAT

2ZNC

3ADK

3APP

3C2C

3CAO

3CBH

3CLA

3CMS

3COX

3CSU

3CTS

3DFR

3EUG

3EZM

3FAP

3FIB

3GCB

3GRS

3KVT

3LAD

3LYN

3LZT

3MAG

3MDD

3NUL

3PCC

3PGA

3PMG

3PRN

3PRO

3PSG

3RAB

3RP2

3SDH

3SEB

3SIL

3SXL

3TAT

3TDT

3TGL

3THI

3TSS

3ULL

3VUB

4BCL

4CAT

4CPA

4FIV

4HB1

4MDH

4PFK

4PGA

4SBV

4SGB

4TS1

4UAG

4UBP

4XIA

5CSM

5CYT

5EAU

5NUL

5PAL

5RUB

5TMP

7A3H

7AAT

7AHL

7FD1

7LYZ

7MDH

7ODC

7TAA

830C

8ABP

8ACN

8TLN

9WGA

PDB ID




















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