[Bioperl-l] parsing blast output

[Irshad Khan]

On 6/18/05, Irshad Khan <iak13000 at gmail.com> wrote:
> Hi,
> 
> If it is in the description part may be you can try this
> 
> $blast_report->next_result->hits()->description;
> 
> let me know if it works
> 
> Irshad
> 
> On 6/18/05, Tuan A. Tran <tuantran167 at gmail.com> wrote:
> > Hi,
> >
> > When I blasted my query sequence against a database, the got the
> > following line (for example)
> >
> > >3R type=chromosome; loc=3R:1..27905053; ID=3R; release=r4.1; species=dmel
> >
> > Using bioperl module,
> >  $blast_report = $factory->blastall($query);
> > I can extract some information like ID = 3R using
> >  $blast_report->next_result->hits()->name;
> >
> >  If I want to keep the entire line as show above what should I do? Is
> > there a module in bioperl? I really appreciate if someone can tell me
> > how to do it.
> >
> > Thanks,
> > TAT
> >
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>