[Bioperl-l] load sequence files into Mysql

[Sean Davis]

On 12/11/05 8:29 PM, "chen li" <chen_li3 at yahoo.com> wrote:

> Hi Hilmar,
> 
> Thanks for the replay.
> 
> Do you mean the files in this link:
> 
> ftp://ftp.ncbi.nih.gov/repository/dbEST/
> 
> There are many files out in this folder. I am not sure
> which one belongs to mouse.

I'm not sure what you need, but UCSC maintains fasta of the mouse for all
mouse genbank records.  See here:

http://hgdownload.cse.ucsc.edu/goldenPath/mm6/bigZips/

They have tables in their database that contain much of the actual genbank
records, but in a relational form.

Sean