[Bioperl-l] SearchIO::Writer::GbrowseGFF

[Jason Stajich]

There is no reason - feel free to modify the code and CC changes to 
Mark and the list.  I think it should be a customizable option not 
required.

-jason
--
Jason Stajich
jason.stajich at duke.edu
http://www.duke.edu/~jes12/

On Apr 12, 2005, at 6:32 PM, Susan J. Miller wrote:

> Jason Stajich wrote:
>> You should be able to just call:
>> my $cigarstring = $hsp->cigar_string.
>> it takes care of delegating to generate_cigar_string for you.
>
> Thank you, Jason - that's exactly what I need.
>
> I have another (semi-related) question:  why doesn't SearchIO 
> write_result output the cigar string when the output_format is 
> 'GbrowseGFF'?
>
>
> Thanks,
>
> Susan J. Miller
> Biotechnology Computing Facility
> University of Arizona
>
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