[Bioperl-l] Entrez Gene parser

[Hilmar Lapp]

Cool, thanks for your work Stefan. I'll be sure to check this out. Is 
Mingyi's parser that presumably you're using on CPAN already?

	-hilmar

On Apr 7, 2005, at 10:50 AM, Stefan Kirov wrote:

> I commited the entrez gene parser code so people can start playing 
> with it if they like and send me any notes, requests and bugs. I know 
> that sometimes specie description can break the code and I am checking 
> if this is due to the GI::Parser::EntrezGene or it is my fault.
> Things that are still on my To do list (in this order):
> 1. convert the seq record to allow back compatibility with the 
> previous locuslink parser. The tags entrezgene uses are different from 
> those ll had, so some renaming needs to be done.
> 2. STS Markers are not in the record yet
> 3. Optimize the code to speed it up where possible
> 4. Check the specie bug
> 5. Fix the cycle reference in Transcript and remove the undef 
> $transcript->{parent} from the parser code
> Please let me know if you have any notes or requests!
> Negative comments appreciated as well.
> Thanks!
> Stefan
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-- 
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Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
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