[Bioperl-l] make test!!

Nathan Haigh nathanhaigh at ukonline.co.uk
Mon Oct 18 08:28:47 EDT 2004


I have managed to do a "nmake test" (WinXP) on bioperl-live.

System: WinXP Pro
ActiveState Perl 5.8.0 build 804
Nmake v6.00.8168.0

A note beforehand:
The error message I had previously got, and heard others have also received
on other OS's. That contain a "line too long" error when trying "make test",
is due to the limitations of the particular OS. Versions of
ExtUtils::MakeMaker >= 6.06 (current version: 6.21) have got round this
problem by splitting long command lines from Makefiles into a series of
smaller commands.

Test Summary:
Failed Test       Stat Wstat Total Fail  Failed  List of Failed
----------------------------------------------------------------------------
---
t\BlastIndex.t     255 65280    13   12  92.31%  2-13
t\Index.t           22  5632    41   21  51.22%  21-41
t\Registry.t        22  5632    11    9  81.82%  3-11
t\RestrictionIO.t  255 65280    14    8  57.14%  7-14
t\seqread_fail.t   255 65280    13    0   0.00%  ??
115 subtests skipped.
Failed 5/192 test scripts, 97.40% okay. 50/8791 subtests failed, 99.43%
okay.
NMAKE : fatal error U1077: 'I:\Programming\Perl\Perl5.8.0\bin\perl.exe' :
return code '0xff'
Stop.


Nathan




> -----Original Message-----
> From: bioperl-l-bounces at portal.open-bio.org [mailto:bioperl-l-
> bounces at portal.open-bio.org] On Behalf Of Aaron J. Mackey
> Sent: 14 October 2004 21:27
> To: Bioperl
> Subject: [Bioperl-l] make test!!
> 
> 
> I've had only a very few people send me feedback about the current
> state of bioperl-live "make test" on your favorite
> old/crotchety/obscure platforms.  I'm writing the Change log and
> thinking about branching, but I'm an experimentalist, I need data!
> 
> Get a bioperl-live HEAD checkout, do a "cvs update -PAd" to make sure
> you have everything, "make distclean" if you've built from the cvs
> checkout before, and start from scratch with the usual litany: perl
> Makefile.PL; make; [setenv BIOPERLDEBUG 1;] make test; email Aaron.
> 
> Setting BIOPERLDEBUG is very noisy, but it's the end result I care
> about, not so much all the verbiage (unless there's specific verbiage
> related to the end result ...)
> 
> Thanks,
> 
> -Aaron
> 
> _______________________________________________
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> Bioperl-l at portal.open-bio.org
> http://portal.open-bio.org/mailman/listinfo/bioperl-l
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