[Bioperl-l] All-vs-all BLAST

[richard sucgang phd]

At 10:52 AM -0400 7/20/04, Jason Stajich wrote:
>If you want to run blast I don't think you really need Bioperl.

I had to wait until someone more knowledgable like Jason said this.
The NCBI BLAST package includes a binary called blastclust that 
automatically runs the all vs all comparison of a set of sequences 
and divides them into clusters (which is the usual reason for running 
such a comparison).

-r
-- 
Richard Sucgang, PhD
(713) 798 7657
http://www.dictygenome.org/