[Bioperl-l] Mid point rooting of a tree

[Chris Zmasek]

Hi, Iain:

You could use my rio/forester package (available at: http://www.genetics.wustl.edu/eddy/forester/).
It contains a Java program called "SDIdirectory" which can root (by various, user selectable methods) all trees in a given directory.
Option "-h" allows to root by minimizing the tree height.
If you have any questions, please feel free to email me.

Hope this helps,

Christian [czmasek at gnf.org]



> -----Original Message-----
> From: Iain Wallace [mailto:iain.wallace at ucd.ie]
> Sent: Thursday, January 08, 2004 4:18 AM
> To: bioperl-l at portal.open-bio.org
> Subject: [Bioperl-l] Mid point rooting of a tree
> 
> 
> Hi all,
> 
> I was wondering if anyone knows of a command line program 
> that can root
> an unrooted tree. I know of a graphical program , NJPlot, but 
> I want to
> root lots of trees output from clustalw.
> 
> Thanks 
> 
> Iain 
> 
> 
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