[Bioperl-l] Bioperl graphics

hz5 at njit.edu hz5 at njit.edu
Tue Feb 24 11:37:13 EST 2004


Dear all,

I am trying to render a CDS using bioperl, I want the arrow ruler on top 
display coordinates from 18058059 to 18068032 but it seems that it is too big, 
the image just wouldn't render

any suggestions?
        #
        #$s = 18058059 and $t = 18068032
        #
        my $whole_seq = Bio::SeqFeature::Generic->new(
                                        -start=>$s,
                                        -end=>$t,
                                        );
        $panel->add_track($whole_seq,
                    -glyph => 'arrow',
                    -fgcolor => 'black',
                        -bump => 0,
                    -bgcolor => 'red',
                    -double=>1,
                    -tick => 2);

Thanks, waiting online!

=========================================================
Haibo Zhang, PhD student
Computational Biology, NJIT & Rutgers University
Center for Applied Genomics, PHRI
http://afs13.njit.edu/~hz5


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