[Bioperl-l] Uniprot

[Heikki Lehvaslaiho]

For the time being the old Swiss-Prot and Uniprot are identical at data level.
Uniprot is a political development integrating PIR. 

>From README:
"The UniProt Knowledgebase has been created from Swiss-Prot, TrEMBL and 
PIR-PSD.
It consists of two parts, one containing fully manually annotated records
and another one with computationally analysed records awaiting full manual
annotation. The two sections will be referred to as the Swiss-Prot 
Knowledgebase and TrEMBL Protein Database, respectively. PIR-PSD release 48.0 
of 28-Oct-2003 has been fully integrated into these sections. This was the 
last release of PIR-PSD. "

	-Heikki

On Tuesday 03 Feb 2004 13:49, Sebastien Moretti wrote:
> Hello
> Is there a BioPerl module to send a request to UniProt db ?
> My script send a request to Swissprot :
>
> 	#!/usr/bin/perl
>
> 	use strict;
> 	use Bio::DB::SwissProt;
> 	use Bio::SeqIO;
> 	my $acc=$ARGV[0];
>
> 	my $gb = new Bio::DB::SwissProt;
> 	my $stream = $gb->get_Seq_by_acc($acc);
>
> 	my $out=Bio::SeqIO->new(-format=>'swiss');
>
> 	my $result=$out->write_seq($stream);
> 	$result =~ s/^1.*$//;
> 	print $result;
>
> 	exit;
>
> But how can I do the same with UniProt ?
> Thanks

-- 
______ _/      _/_____________________________________________________
      _/      _/                      http://www.ebi.ac.uk/mutations/
     _/  _/  _/  Heikki Lehvaslaiho    heikki_at_ebi ac uk
    _/_/_/_/_/  EMBL Outstation, European Bioinformatics Institute
   _/  _/  _/  Wellcome Trust Genome Campus, Hinxton
  _/  _/  _/  Cambs. CB10 1SD, United Kingdom
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