[Bioperl-l] Uniprot

[Brian Osborne]

Sebastien,

Unfortunately no, there's no way to do a query of UniProt with Bioperl
currently. You're looking for some data that's neither in Swissprot nor in
PIR?

Brian O.

-----Original Message-----
From: bioperl-l-bounces at portal.open-bio.org
[mailto:bioperl-l-bounces at portal.open-bio.org]On Behalf Of Sebastien Moretti
Sent: Tuesday, February 03, 2004 8:49 AM
To: bioperl-l at bioperl.org
Subject: [Bioperl-l] Uniprot

Hello
Is there a BioPerl module to send a request to UniProt db ?
My script send a request to Swissprot :

        #!/usr/bin/perl

        use strict;
        use Bio::DB::SwissProt;
        use Bio::SeqIO;
        my $acc=$ARGV[0];

        my $gb = new Bio::DB::SwissProt;
        my $stream = $gb->get_Seq_by_acc($acc);

        my $out=Bio::SeqIO->new(-format=>'swiss');

        my $result=$out->write_seq($stream);
        $result =~ s/^1.*$//;
        print $result;

        exit;

But how can I do the same with UniProt ?
Thanks

--
Sebastien MORETTI
CNRS - IGS
31 chemin Joseph Aiguier
13402 Marseille cedex 20, FRANCE
tel. 04 91 16 44 55 - 06 61 88 59 00
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