[Bioperl-l] Fwd: Bioperl 1.4.0(BUG)

[Jason Stajich]

Begin forwarded message:

> From: lenavarzim at portugalmail.pt
> Date: December 21, 2004 12:17:49 PM EST
> To: Jason Stajich <jason.stajich at gmail.com>
> Subject: Re: Bioperl 1.4.0(BUG)
>
>
>
> Jason,
>
> the accession number is: AE000440 (Escheriachia coli k-12 MG1655 
> section 330 of
> 400 of the complete genome).
> The program code:
> use Bio::Perl;
> get_Sequence('Genbank','AE000440');
> the problem is on this method (get_Sequence).I'm not using the 
> protrein, i'm
> using the nucleotide.
>
> Madalena
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> Citando Jason Stajich <jason.stajich at gmail.com>:
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>  We would need the accession and the code you are using to adequately
>  determine the problem.
>
>  Usually when people have this type of problem they are using a protein
>  accession against genbank.  If this is the case use Bio::DB::GenPept
>  for protein accessions.
>
>  -jason
>  On Dec 21, 2004, at 12:02 PM, lenavarzim at portugalmail.pt wrote:
>
>>
>> Hi!
>>
>> I'm using Bioperl 1.4.0 and i have the next problem:
>>
>>
>> I'm using Bio::DB::GenBank to query Genbank and I'm certain that the 
>> ac
>> (accession number) is there but I'm seeing the error "MSG: acc does
>> not exist".
>>
>> I wait your answer.
>> thanks,
>> Madalena Varzim (student from University of Minho - Portugal)
>>
>>
>>
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>>
>  --
>  Jason Stajich
>  jason.stajich-at-gmail.com or jason-at-bioperl.org
>  http://jason.open-bio.org
>
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--
Jason Stajich
jason.stajich-at-gmail.com or jason-at-bioperl.org
http://jason.open-bio.org
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