[Bioperl-l] Parsing TGICL-CAP3 ACE result files

[Marc Logghe]

Hi Javier,
It is already quite old now, don't know what changes have been done in the mean time.
Have a try with the Bio::Assembly::IO::ace file attached.
This package I used for exactly the same purpose as you.
Good luck,
Marc

> -----Original Message-----
> From: Javier Forment Millet [mailto:jforment at ibmcp.upv.es]
> Sent: Tuesday, December 14, 2004 12:08 PM
> To: bioperl-l at portal.open-bio.org
> Subject: [Bioperl-l] Parsing TGICL-CAP3 ACE result files
> 
> 
> Hi,...
> 
> I have to parse CAP3 ACE result files obtained with the TGICL 
> pipeline (TIGR
> Gene Indices clustering tools). I know about the 
> bioperl-1.4::Bio::Assembly
> module for working with contig assemblies, but it seems to be 
> Phrap-orientated.
> Has anybody parsed CAP3 ACE result files with this module or 
> a modification of
> it? Is there another module available for parsing these files?
> 
> Thanks a lot,
> 
> Javier.
> 
> -- 
> Javier Forment Millet
> Instituto de Biologia Molecular y Celular de Plantas (IBMCP)
> UPV-CSIC
> Avenida de los Naranjos, s/n
> 46022 Valencia (SPAIN)
> jforment at ibmcp.upv.es
> Tlf.:+34-96-3877885
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at portal.open-bio.org
> http://portal.open-bio.org/mailman/listinfo/bioperl-l
> 
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