[Bioperl-l] Re: How can I extract the orientation from a blastreport using BPlite

[Jason Stajich]

Please ask these questions on the bioperl list.

Try out the help in the SearchIO HOWTO first to answer your question. 
See the bioperl.org website for the FAQ pointer.

On Dec 13, 2004, at 6:50 PM, omid gulban wrote:

> Hi Jason,
>
> I am using BPliste to parse some blast reports I could not find a 
> method that allows you to parse orientaion information about the 
> alignemnt.
> Is it possible to do so or there is other bioperl modules that allow 
> you to extract such information.
>
> many thanks
> Omid
>
--
Jason Stajich
jason.stajich at duke.edu
http://www.duke.edu/~jes12/