[Bioperl-l] GFF to gene structure pictures

Lincoln Stein lstein at cshl.edu
Tue Sep 9 17:16:03 EDT 2003


Did you get this working?  It should be a short script:

	#!/usr/bin/perl

	use strict;
	use Bio::Graphics::FeatureFile;
	my $file = Bio::Graphics::FeatureFile->new(-file=>shift);
	my ($number_rendered,$panel) = $file->render;
	print $panel->png;

Lincoln


On Thursday 21 August 2003 11:14 am, Andrew Ram wrote:
> Hi everyone
> I would like to convert my gene structures I have in GFF or GTF format to
> nice pictures probably using the BioGraphics tools. Can someone out there
> help me with any scripts?
> Thanks very much in advance-Looking forward to hearing from the group!
> Andrew
>
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-- 
Lincoln Stein
lstein at cshl.edu
Cold Spring Harbor Laboratory
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