[Bioperl-l] can't start 'water'

[Catherine Letondal]

On Sat, Sep 06, 2003 at 03:29:26PM +0300, Vesko Baev wrote:
> [...] 
> AND when I wrote 'use Bio::Tools::Run::PiseApplication::water;'
> the message was:
> Can't locate XML/Parser/PerlSAX.pm in @INC?!?!?!

You need to have XML::Parser::PerlSAX, LWP::UserAgent and
HTTP::Request::Common in order to use Pise bioperl modules.

BTW, you should not use a PiseApplication directly, but rather through
a factory. So, instead of:

    use Bio::Tools::Run::PiseApplication::water;

you rather put:

    use Bio::Tools::Run::AnalysisFactory::Pise;
    my $factory = new Bio::Tools::Run::AnalysisFactory::Pise();
    my $water = $factory->program('water');

See Bio::Tools::Run::AnalysisFactory::Pise synopsis for further
details. 

-- 
Catherine Letondal -- Pasteur Institute Computing Center