[Bioperl-l] Bio::SeqIO

[Lobvi Matamoros]

Hi everybody:

When I tried to run a perl script containing the Bio::SeqIO: object I get 
this message:


C:\Perl\site\lib>perl Convert.pl
Bio::SeqIO: txt cannot be found
Exception
------------- EXCEPTION  -------------
MSG: Failed to load module Bio::SeqIO::txt. Can't locate Bio\SeqIO\txt.pm 
in @IN
C (@INC contains: C:/Perl/lib C:/Perl/site/lib .) at 
C:/Perl/site/lib/Bio/Root/R
oot.pm line 407.

STACK Bio::Root::Root::_load_module C:/Perl/site/lib/Bio/Root/Root.pm:409
STACK (eval) C:/Perl/site/lib/Bio/SeqIO.pm:535
STACK Bio::SeqIO::_load_format_module C:/Perl/site/lib/Bio/SeqIO.pm:534
STACK Bio::SeqIO::new C:/Perl/site/lib/Bio/SeqIO.pm:367
STACK toplevel Convert.pl:2

--------------------------------------

For more information about the SeqIO system please see the SeqIO docs.
This includes ways of checking for formats at compile time, not run time
Can't call method "next_seq" on an undefined value at Convert.pl line 6.

Since I believed that it was a problem of installation of this object I 
tried to install the Bio::SeqIO object but I got the following message:

Error installing package 'Bio-SeqIO': Could not locate a PPD file for 
package Bi
o-SeqIO

On the other hand I was able to run all test the scripts contained in 
bptutorial.pl file which is include in the bioperl package. I am working on 
Windows but I was able to run these scripts by just unziping the bioperl 
file and coping the t folder to the directory where the installation of 
bioperl was done with ppm command as recommended for windows users.





C:\Perl\site\lib>