[Bioperl-l] Bio::DB::Registry

[Daniel Lang]

Thanks Brian, but still not working:(

On Wednesday 15 October 2003 16:31, Brian Osborne wrote:
> My guess is that you need to set the variable OBDA_INDEX. A value of "flat"
> means use the built-in scheme, a value of "bdb" means use BerkeleyDB, which
I tried both flat and bdb with the corresponding  OBDA_INDEX enviroment 
variable  setting.
 
> (http://bioperl.org/HOWTOs/html/OBDA_Access.html)?
Yes I configured everything correspondingly.

I was also confused, that in the current cvs the bioflat_index.pl script can 
only be found in scripts/DB/attic and not in examples/db?
So the version I´m using is the one from attic...

Maybe somehing is wrong with my config.dat:
index   flat/1
fileid_0        /export/flatfiles/ppp.seq       13155893
primary_namespace       ACC
secondary_namespaces    ID
format  URN:LSID:open-bio.org:fasta

Thanks in advance,
Daniel

  
-- 
Daniel Lang
University of Freiburg, Plant Biotechnology
Sonnenstr. 5, D-79104 Freiburg
phone: +49 761 203 6988
homepage:  http://www.plant-biotech.net/
e-mail: daniel.lang at biologie.uni-freiburg.de

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