[Bioperl-l] SiteMatrix

[Stefan Kirov]

Yup:-)), actually you can supply two types of input data - arrays or 
strings:
-pA=>\@pA, where @pA=(0.7,0.3,0.5,0.1,0.9)
or
-pA=>$pA, where $pA='73519'
So the lines you commented out are necessary to parse the string input, 
however I guess it is my mistake somewhere if the input type is not 
recognized correctly and SiteMatrix is trying to parse arrays as 
strings. Could you send me the warnings you are getting? I am runnning 
5.8.0 and did not get any.
Thanks!
Stefan

Heikki Lehvaslaiho wrote:

> Stefan,
>
> t/psm.t was printing out warnings originating from
> Bio::Matrix::PSM::SiteMatrix (under perl 5.8.2). I commented out some
> lines in the constructor that were trying to split non-existing hash
> values. All tests pass. Could you check that I did not do anything
> stupid.
>
> Cheers,
>     -Heikki
>
>
>  
>