[Bioperl-l] BioFetch_DB.t fails 4 tests

[Heikki Lehvaslaiho]

This is great. Cleaner than Elia's hack. Could you make sure it gets
into 1.2 branch as well.

	-heikki


On Mon, 2003-03-10 at 12:39, Aaron J Mackey wrote:
> I've got a fix for the fasta.pm parser to ignore leading whitespace before
> the first entry ... just running all the tests now to make sure it's good.
> 
> -Aaron
> 
> On 10 Mar 2003, Heikki Lehvaslaiho wrote:
> 
> > Only one test fails now for me:
> >
> > not ok 18
> > # Test 18 got: '0' (t/BioFetch_DB.t at line 92)
> > #    Expected: '103'
> >
> > This is caused by asking sequence in fasta format from swall database.
> > Setting verbose to 2 gives:
> >
> > request is POST http://www.ebi.ac.uk/cgi-bin/dbfetch
> > Content-Length: 43
> > Content-Type: application/x-www-form-urlencoded
> >
> > db=swall&id=P43780&format=fasta&style=raw
> >
> > Which pasted into browser as:
> >
> > http://www.ebi.ac.uk/cgi-bin/dbfetch?db=swall&id=P43780&format=fasta&style=raw
> >
> > retieves the enry ok.
> >
> >
> > Retrieving anything in fasta format using BioFetch is now broken, but I
> > can not figure out where the error comes from. Anyone?
> >
> > 	-Heikki
> >
> >
> > On Fri, 2003-03-07 at 02:11, Hilmar Lapp wrote:
> > > not ok 18
> > > # Test 18 got: '0' (t/BioFetch_DB.t at line 92)
> > > #    Expected: '103'
> > > ok 19
> > > not ok 20
> > > # Test 20 got: '0' (t/BioFetch_DB.t at line 115)
> > > #    Expected: '408'
> > > not ok 21
> > > # Test 21 got: '408' (t/BioFetch_DB.t at line 116)
> > > #    Expected: '1611'
> > > not ok 22
> > > # Test 22 got: '1611' (t/BioFetch_DB.t at line 117)
> > > #    Expected: '200'
> > >
> > > All others are ok.
> >
-- 
______ _/      _/_____________________________________________________
      _/      _/                      http://www.ebi.ac.uk/mutations/
     _/  _/  _/  Heikki Lehvaslaiho          heikki at ebi.ac.uk
    _/_/_/_/_/  EMBL Outstation, European Bioinformatics Institute
   _/  _/  _/  Wellcome Trust Genome Campus, Hinxton
  _/  _/  _/  Cambs. CB10 1SD, United Kingdom
     _/      Phone: +44 (0)1223 494 644   FAX: +44 (0)1223 494 468
___ _/_/_/_/_/________________________________________________________