[Bioperl-l] UCSC database -> GFF

Hilmar Lapp hlapp at gmx.net
Thu Jun 19 12:21:13 EDT 2003


On Thursday, June 19, 2003, at 01:04  AM, Ewan Birney wrote:

> Ensembl has a very sensible, stable, easy to install, Bioperl inspired 
> API
> which I'd be happy to decorate to make more bioperl compatible via some
> bridge, but forcing things through arbitary formats is 
> straightforwardly
> silly.
>

What about a flat file format though? What if I just don't want to set 
up a MySQL server, install DBD::mysql, and load in the MySQL dump?

	-hilmar

-- 
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Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
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