[Bioperl-l] Re: Merged my code with bioprrl-ext-06

[Yee Man Chan]

Hi Aaron,

	Per your request, I added code to test.pl to call my functions. It
seems to work alright based on my tests. You can find my new code at 

http://www.stanford.edu/~yeeman/bioperl-ext.tar.gz

	Ewan: I finally figured out how to make an AlnBlock object.
align_and_show now seems to be working. However, it still can't display
the matching type (either + or an AA char) in the middle. Maybe I will try
to figure this out in the next release.

Regard,
Yee Man

On Thu, 5 Jun 2003, Aaron J Mackey wrote:

> 
> OK, it's in the latest CVS checkouts of bioperl-ext and bioperl-live.
> I had to do some tweaking (mainly namespace issues), but it all seems to
> work.
> 
> Yee, it would be good if you could add some tests for dpAlign.
> 
> -Aaron
> 
> On Tue, 3 Jun 2003, Yee Man Chan wrote:
> 
> >
> > Hi Aaron,
> >
> > 	I merged my alignment code with bioperl-ext-06. I also added
> > bioperl style comments into my PM files. I posted them at
> >
> > http://www.stanford.edu/~yeeman/bioperl-ext.tar.gz
> > http://www.stanford.edu/~yeeman/dpAlign.pm
> >
> > 	The dpAlign.pm should be copied to the bioperl main distribution
> > under Bio::Tools.
> >
> > 	I think I have done all I can do on my own. What is the next step
> > to put my code in the bioperl codebase?
> >
> > Thanks a lot.
> > Yee Man
> >
> 
> -- 
>  Aaron J Mackey
>  Pearson Laboratory
>  University of Virginia
>  (434) 924-2821
>  amackey at virginia.edu
> 
>