[Bioperl-l] get_Seq_by_acc() in Bio::DB::GeneBank failed

jun hu junhu54 at hotmail.com
Fri Jun 13 18:27:45 EDT 2003


Hi, Eveyone,
I just downloaded and installed bioperl on my linux 9 machine, after that, I 
tried test 1 to 22 of the bptutorial.pl. All test run fine except the test 
11, the remote db access. I also tried the getGeneBank.pl script , the same 
error happened.
Error message

------------- EXCEPTION  -------------
MSG: acc does not exist
STACK Bio::DB::WebDBSeqI::get_Seq_by_acc 
/usr/lib/perl5/site_perl/5.8.0/Bio/DB/WebDBSeqI.pm:176

The debug is also tried, seems I never get anything from the buffer or 
readline ...
I am wondering where or not the firewall is an issue? But I can use NCBI web 
site to find the gene that I am fetching by bioperl ...
Does anyone have any idea about this problem?

Jun Hu
UMDNJ

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