[Bioperl-l] problem with Bio::DB::Query::GenBank

Prachi Shah prachi_shroff at yahoo.com
Thu Jan 30 10:12:08 EST 2003


Hi Everyone! 

I just started using it and my first little 'Hello
world' quality script failed with the following error:


Can't locate object method "new" via package
"Bio::DB::Query::GenBank" (perhaps you forgot to load
"Bio::DB::Query::GenBank"?) at C:\tryBioPerl.pl line
5. 

I checked the GenBank.pm and the code looks ok. And of
course, I did not forget to load
"Bio::DB::Query::GenBank". I am using Active state
Perl 5.6.1 for Win32 and BioPerl 1.2 on Windows 2000
system. 
Any ideas on this are greatly appreciated. 

Thanks, 
Prachi. 

##### Code starts here. ##### 

#! perl -w 

use strict; 
use Bio::Perl; 

my $query_string = 'Gallus gallus[Organism] AND ATP'; 
my $query =
Bio::DB::Query::GenBank->new(-db=>'nucleotide', 
  -query=>$query_string); 
my $count = $query->count; 
my @ids   = $query->get_Ids; 

print "COUNT $count\n"; 
print " IDS \n @ids"; 



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