[Bioperl-l] Finding subject length with BPlite

[Jason Stajich]

For BPlite:
 $hsp->hit->seqlength();   # hit length

On Fri, 10 Jan 2003, nkuipers wrote:

> Would length( $hsp->sbjctSeq ) do the trick for you?  Worth a shot perhaps...
>
> nathanael
>
>
> >===== Original Message From "Susan J. Miller" <sjmiller@u.arizona.edu> =====
> >What is the recommended way to pull the subject length (not match
> >length) out of a BLAST report with BPlite?  There used to be a
> >$sbjct->length() method but it no longer exists. (I know SearchIO will
> >do it but would rather not rewrite existing scripts).
> >
> >--
> >Thanks,
> >-susan
> >
> >Susan J. Miller
> >Biotechnology Computing Facility
> >Arizona Research Laboratories
> >Bio West 228
> >University of Arizona
> >Tucson, AZ  85721
> >(520) 626-2597
> >_______________________________________________
> >Bioperl-l mailing list
> >Bioperl-l@bioperl.org
> >http://bioperl.org/mailman/listinfo/bioperl-l
>
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l@bioperl.org
> http://bioperl.org/mailman/listinfo/bioperl-l
>

--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu