[Bioperl-l] SearchIO::hmmer - Missing last hit

James Wasmuth james.wasmuth at ed.ac.uk
Mon Feb 24 13:50:16 EST 2003


Dear All,

I'm not sure whether this is a bug or a fault on my part.

I'm using SearchIO::hmmer, and keep getting the same error message when 
parsing a HMMSearch output file.

Can't use an undefined value as an ARRAY reference at 
/usr/local/lib/perl5/site_perl/5.8.0/Bio/SearchIO/hmmer.pm line 291, 
<GEN1> line X.

where X is the line containing the header for the last hit.

I'm using the latest release of the module grabbed feom CVS but to no 
avail.  Any ideas?

Cheers
James




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