[Bioperl-l] StandAlone BLAST error

Tobias Thierer bioperl-l at bioperl.org
Sun Feb 2 14:25:49 EST 2003


> I am trying to blast sequences from a COG against a single sequence in a
> loop. After successfully blasting about 10 sequences, I get the following
> error. Can anybody throw some light on this ? Thanks in advance for any
> comments.

This was a known bug in bl2seq in which I have also run once: the parser
throws an exception when there is no hit, in contrast to returning 0 as
stated in the documentation), but I think I remember that this bug was
fixed recently. Do you have the newest version of BioPerl (at least v1.2)?


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