[Bioperl-l] SeqIO tests fail

Heikki Lehvaslaiho heikki at nildram.co.uk
Wed Dec 17 08:09:53 EST 2003


It seems that Sheldon is using some test editor that has a tendency to wrap 
lines. Reverted.

	-Heikki

On Wednesday 17 Dec 2003 8:14 am, Hilmar Lapp wrote:
> I get 4 failures for SeqIO.t that seem to be related to a newline
> problem:
>
> not ok 159
> # Test 159 got: '(CALM1 OR CAM1 OR CALM OR CAM) AND (CALM2 OR CAM2 OR
> CAMB) AND (CALM3 OR CAM3 OR CAMC)' (t/SeqIO.t at line 408)
> #     Expected: '(CALM1 OR CAM1 OR CALM OR CAM) AND (CALM2 OR CAM2 OR
> CAMB) AND (CALM3 OR
> CAM3 OR CAMC)'
>
> Not sure the email client won't introduce more random line breaks, but
> essentially the deal is that the two values are identical except for an
> additional linebreak in the expected value. I have 3 more such failures.
>
> This is on Mac OSX. Before I investigate, does anybody have an upfront
> idea what's been changed here that could cause this? Jason, may those
> recent \r\n-related regexp changes be involved here?
>
> 	-hilmar

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