[Bioperl-l] doing a 1.2.3 release

Rob Edwards redwards at utmem.edu
Thu Aug 28 13:01:10 EDT 2003


I would also add:

Enhancement to Bio::DB::GenBank to allow subsequence retrieval
http://bugzilla.open-bio.org/show_bug.cgi?id=1405

To this list. Two versions of patches are in bugzilla, so it should (?) 
be easy.

Rob


On Thursday, August 28, 2003, at 11:34  AM, Jason Stajich wrote:

>
>> I'd agree. I also think we need to start on the 1.3 series. Heikki...
>> feel free to chime in...?
>>
>>
>> Jason - I am ok for some bug hunting for a while on either branch or 
>> trunk
>> - any not-so-nasty-that-I-go-mad-but-useful-to-fix-bugs out there?
>
> Fix translate() to check for completeness on 5' and 3' end
>   http://bugzilla.open-bio.org/show_bug.cgi?id=1476
> PDB residue recognition code
>   http://bugzilla.open-bio.org/show_bug.cgi?id=1485
> Look at Keith's old bug, I don't know if it is still broken
>  http://bugzilla.open-bio.org/show_bug.cgi?id=992
>
> For fun bugs to fix on the main trunk
> NCBI Contig entries - do we really handle them correctly now?
>   http://bugzilla.open-bio.org/show_bug.cgi?id=1319
>
> Depending on how Juguang's Bio::Species/ Bio::Taxomomy::Node connection
> evolves I think this bug will get fixed in the process.
>  http://bugzilla.open-bio.org/show_bug.cgi?id=1244
>
>
>
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